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1

Genetics of rheumatoid arthritis contributes to biology and drug discovery

Okada, Yukinori, Wu, Di, Trynka, Gosia, Raj, Towfique, Terao, Chikashi, Ikari, Katsunori, Kochi, Yuta, Ohmura, Koichiro, Suzuki, Akari, Yoshida, Shinji, Graham, Robert R., Manoharan, Arun, Ortmann, Wa

Journal:

Year:

2013

Language:

english

File:

PDF, 6.41 MB

english, 2013

2

Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease

Trynka, Gosia, Hunt, Karen A, Bockett, Nicholas A, Romanos, Jihane, Mistry, Vanisha, Szperl, Agata, Bakker, Sjoerd F, Bardella, Maria Teresa, Bhaw-Rosun, Leena, Castillejo, Gemma, de la Concha, Emilio

Journal:

Nature Genetics

Year:

2011

Language:

english

File:

PDF, 1.05 MB

english, 2011

3

Contrasting the Genetic Background of Type 1 Diabetes and Celiac Disease Autoimmunity

Gutierrez-Achury, Javier, Romanos, Jihane, Bakker, Sjoerd F., Kumar, Vinod, de Haas, Esther C., Trynka, Gosia, Ricaño-Ponce, Isis, Steck, Andrea, Chen, Wei-Min, Onengut-Gumuscu, Suna, Simsek, Suat, Re

Journal:

Year:

2015

Language:

english

File:

PDF, 2.17 MB

english, 2015

4

Partitioning Heritability of Regulatory and Cell-Type-Specific Variants across 11 Common Diseases

Gusev, Alexander, Lee, S. Hong, Trynka, Gosia, Finucane, Hilary, Vilhjálmsson, Bjarni J., Xu, Han, Zang, Chongzhi, Ripke, Stephan, Bulik-Sullivan, Brendan, Stahl, Eli, Kähler, Anna K., Hultman, Christ

Journal:

The American Journal of Human Genetics

Year:

2014

Language:

english

File:

PDF, 1.10 MB

english, 2014

5

Convergent evolution in European and Rroma populations reveals pressure exerted by plague on Toll-like receptors

Laayouni, H., Oosting, M., Luisi, P., Ioana, M., Alonso, S., Ricano-Ponce, I., Trynka, G., Zhernakova, A., Plantinga, T. S., Cheng, S.-C., van der Meer, J. W. M., Popp, R., Sood, A., Thelma, B. K., Wi

Journal:

Proceedings of the National Academy of Sciences

Year:

2014

Language:

english

File:

PDF, 2.68 MB

english, 2014

6

The influence of a short-term gluten-free diet on the human gut microbiome

Bonder, Marc Jan, Tigchelaar, Ettje F., Cai, Xianghang, Trynka, Gosia, Cenit, Maria C., Hrdlickova, Barbara, Zhong, Huanzi, Vatanen, Tommi, Gevers, Dirk, Wijmenga, Cisca, Wang, Yang, Zhernakova, Alexa

Journal:

Genome Medicine

Year:

2016

Language:

english

File:

PDF, 1.02 MB

english, 2016

7

Detection, Imputation, and Association Analysis of Small Deletions and Null Alleles on Oligonucleotide Arrays

Lude Franke, Carolien G.F. de Kovel, Yurii S. Aulchenko, Gosia Trynka, Alexandra Zhernakova, Karen A. Hunt, Hylke M. Blauw, Leonard H. van den Berg, Roel Ophoff, Panagiotis Deloukas, David A. van Heel

Journal:

The American Journal of Human Genetics

Year:

2008

Language:

english

File:

PDF, 2.00 MB

english, 2008

8

Evaluation of European coeliac disease risk variants in a north Indian population

Senapati, Sabyasachi, Gutierrez-Achury, Javier, Sood, Ajit, Midha, Vandana, Szperl, Agata, Romanos, Jihane, Zhernakova, Alexandra, Franke, Lude, Alonso, Santos, Thelma, B K, Wijmenga, Cisca, Trynka, G

Journal:

European Journal of Human Genetics

Year:

2015

Language:

english

File:

PDF, 1.05 MB

english, 2015

9

Genetic Analysis of Innate Immunity in Crohn's Disease and Ulcerative Colitis Identifies Two Susceptibility Loci Harboring CARD9 and IL18RAP

Alexandra Zhernakova, Eleanora M. Festen, Lude Franke, Gosia Trynka, Cleo C. van Diemen, Alienke J. Monsuur, Marianna Bevova, Rian M. Nijmeijer, Ruben van ‘t Slot, Roel Heijmans, H. Marike Boezen, Dav

Journal:

The American Journal of Human Genetics

Year:

2008

Language:

english

File:

PDF, 181 KB

english, 2008

10

Genomic profiling of T-cell activation suggests increased sensitivity of memory T cells to CD28 costimulation

Glinos, Dafni A., Soskic, Blagoje, Williams, Cayman, Kennedy, Alan, Jostins, Luke, Sansom, David M., Trynka, Gosia

Journal:

Genes and Immunity

Year:

2020

File:

PDF, 3.87 MB

2020

11

815 An Insertion of Eight Amino Acids in HLA-DQA1 and Three Amino Acid Substitutions in HLA-DQA1 and HLA-DQB1 Confer Risk to Idiopathic Achalasia

Gockel, Ines, Becker, Jessica, Wouters, Mira M., Brun, Paola, Vigo, Ana González, Trynka, Gosia, Kumar, Vinod, Franke, Lude, Westra, Harm-Jan, Wijmenga, Cisca, Zaninotto, Giovanni, Drescher, Daniel G.

Journal:

Gastroenterology

Year:

2013

Language:

english

File:

PDF, 188 KB

english, 2013

12

Corrigendum: Multiple common variants for celiac disease influencing immune gene expression

Ádány, Róza, Aromaa, Arpo, Dubois, Patrick C A, Trynka, Gosia, Franke, Lude, Hunt, Karen A, Romanos, Jihane, Curtotti, Alessandra, Zhernakova, Alexandra, Heap, Graham A R

Journal:

Nature Genetics

Year:

2010

Language:

english

File:

PDF, 63 KB

english, 2010

13

Multiple common variants for celiac disease influencing immune gene expression

Dubois, Patrick C A, Trynka, Gosia, Franke, Lude, Hunt, Karen A, Romanos, Jihane, Curtotti, Alessandra, Zhernakova, Alexandra, Heap, Graham A R, Ádány, Róza, Aromaa, Arpo

Journal:

Nature Genetics

Year:

2010

Language:

english

File:

PDF, 784 KB

english, 2010

14

Common and different genetic background for rheumatoid arthritis and coeliac disease

Coenen, M. J. H., Trynka, G., Heskamp, S., Franke, B., van Diemen, C. C., Smolonska, J., van Leeuwen, M., Brouwer, E., Boezen, M. H., Postma, D. S., Platteel, M., Zanen, P., Lammers, J.-W. W. J., Groe

Journal:

Human Molecular Genetics

Year:

2009

Language:

english

File:

PDF, 138 KB

english, 2009

15

Analysis of HLA and Non-HLA Alleles Can Identify Individuals at High Risk for Celiac Disease

Jihane Romanos, Cleo C. van Diemen, Ilja M. Nolte, Gosia Trynka, Alexandra Zhernakova, Jingyuan Fu, Maria Teresa Bardella, Donatella Barisani, Ross McManus, David A. van Heel, Cisca Wijmenga

Journal:

Gastroenterology

Year:

2009

Language:

english

File:

PDF, 1.15 MB

english, 2009

16

Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci

Zhernakova, A., Stahl, E. A., Trynka, G., Raychaudhuri, S., Festen, E., Franke, L., Fehrmann, R. S. N., Kurreeman, F. A. S., Thomson, B., Gupta, N., Romanos, J., McManus, R., Ryan, A. W., Turner, G.,

Journal:

Annals of the Rheumatic Diseases

Year:

2011

Language:

english

File:

PDF, 65 KB

english, 2011

17

Potential Celiac Patients: A Model of Celiac Disease Pathogenesis

Sperandeo, Maria Pia, Tosco, Antonella, Izzo, Valentina, Tucci, Francesca, Troncone, Riccardo, Auricchio, Renata, Romanos, Jihane, Trynka, Gosia, Auricchio, Salvatore, Jabri, Bana, Greco, Luigi, Schön

Journal:

Year:

2011

Language:

english

File:

PDF, 260 KB

english, 2011

18

Immunogenomic approaches to understand the function of immune disease variants

Glinos, Dafni Anna, Soskic, Blagoje, Trynka, Gosia

Journal:

Year:

2017

Language:

english

File:

PDF, 1.07 MB

english, 2017

19

Regulation of Gene Expression in Autoimmune Disease Loci and the Genetic Basis of Proliferation in CD4+ Effector Memory T Cells

Hu, Xinli, Kim, Hyun, Raj, Towfique, Brennan, Patrick J., Trynka, Gosia, Teslovich, Nikola, Slowikowski, Kamil, Chen, Wei-Min, Onengut, Suna, Baecher-Allan, Clare, De Jager, Philip L., Rich, Stephen S

Journal:

Year:

2014

Language:

english

File:

PDF, 1.08 MB

english, 2014

20

From GWAS to Function: Using Functional Genomics to Identify the Mechanisms Underlying Complex Diseases

Cano-Gamez, Eddie, Trynka, Gosia

Journal:

Frontiers in Genetics

Year:

2020

File:

PDF, 2.47 MB

2020

21

A genetic variant in the region of MMP-9 is associated with serum levels and progression of joint damage in rheumatoid arthritis

de Rooy, D. P. C., Zhernakova, A., Tsonaka, R., Willemze, A., Kurreeman, B. A. S., Trynka, G., van Toorn, L., Toes, R. E. M., Huizinga, T. W. J., Houwing-Duistermaat, J. J., Gregersen, P. K., van der

Journal:

Annals of the Rheumatic Diseases

Year:

2014

Language:

english

File:

PDF, 1.02 MB

english, 2014

22

Disentangling the Effects of Colocalizing Genomic Annotations to Functionally Prioritize Non-coding Variants within Complex-Trait Loci

Trynka, Gosia, Westra, Harm-Jan, Slowikowski, Kamil, Hu, Xinli, Xu, Han, Stranger, Barbara E., Klein, Robert J., Han, Buhm, Raychaudhuri, Soumya

Journal:

The American Journal of Human Genetics

Year:

2015

Language:

english

File:

PDF, 2.45 MB

english, 2015

23

Enhancers looping to target genes

Journal:

Nature Genetics

Year:

2017

Language:

english

File:

PDF, 164 KB

english, 2017

24

Complex nature of SNP genotype effects on gene expression in primary human leucocytes

Graham A Heap, Gosia Trynka, Ritsert C Jansen, Marcel Bruinenberg, Morris A Swertz, Lotte C Dinesen, Karen A Hunt, Cisca Wijmenga, David A vanHeel, Lude Franke

Journal:

BMC Medical Genomics

Year:

2009

Language:

english

File:

PDF, 1.18 MB

english, 2009

25

OP0049 A Genetic Variant in the Region of MMP-9 is Associated with Serum Levels and Progression of Joint Damage in Rheumatoid Arthritis

De Rooy, D., Zhernakova, A., Tsonaka, R., Willemze, A., Kurreeman, F., Trynka, G., van Toorn, L., Toes, R., Huizinga, T., Houwing-Duistermaat, J., Gregersen, P., van der Helm-van Mil, A.

Journal:

Annals of the Rheumatic Diseases

Year:

2013

Language:

english

File:

PDF, 259 KB

english, 2013

26

Exome sequencing in a family segregating for celiac disease

AM Szperl, I Ricaño-Ponce, JK Li, P Deelen, A Kanterakis, V Plagnol, F van Dijk, HJ Westra, G Trynka, CJ Mulder, M Swertz, C Wijmenga, H Ch Zheng

Journal:

Clinical Genetics

Year:

2011

Language:

english

File:

PDF, 610 KB

english, 2011

27

Genome-Wide Association Study and Gene Expression Analysis Identifies CD84 as a Predictor of Response to Etanercept Therapy in Rheumatoid Arthritis

Cui, Jing, Stahl, Eli A., Saevarsdottir, Saedis, Miceli, Corinne, Diogo, Dorothee, Trynka, Gosia, Raj, Towfique, Mirkov, Maša Umiċeviċ, Canhao, Helena, Ikari, Katsunori, Terao, Chikashi, Okada, Yukino

Journal:

Year:

2013

Language:

english

File:

PDF, 1.09 MB

english, 2013

28

Bayesian inference analyses of the polygenic architecture of rheumatoid arthritis

Stahl, Eli A, Wegmann, Daniel, Trynka, Gosia, Gutierrez-Achury, Javier, Do, Ron, Voight, Benjamin F, Kraft, Peter, Chen, Robert, Kallberg, Henrik J, Kurreeman, Fina A S, Kathiresan, Sekar, Wijmenga, C

Journal:

Nature Genetics

Year:

2012

Language:

english

File:

PDF, 654 KB

english, 2012

29

Fine mapping of the celiac disease-associated LPP locus reveals a potential functional variant

Almeida, R., Ricano-Ponce, I., Kumar, V., Deelen, P., Szperl, A., Trynka, G., Gutierrez-Achury, J., Kanterakis, A., Westra, H.-J., Franke, L., Swertz, M. A., Platteel, M., Bilbao, J. R., Barisani, D.,

Journal:

Human Molecular Genetics

Year:

2014

Language:

english

File:

PDF, 304 KB

english, 2014

30

Common variants in the HLA-DQ region confer susceptibility to idiopathic achalasia

Gockel, Ines, Becker, Jessica, Wouters, Mira M, Niebisch, Stefan, Gockel, Henning R, Hess, Timo, Ramonet, David, Zimmermann, Julian, Vigo, Ana González, Trynka, Gosia, de León, Antonio Ruiz, de la Ser

Journal:

Nature Genetics

Year:

2014

Language:

english

File:

PDF, 471 KB

english, 2014

31

Chromatin marks identify critical cell types for fine mapping complex trait variants

Trynka, Gosia, Sandor, Cynthia, Han, Buhm, Xu, Han, Stranger, Barbara E, Liu, X Shirley, Raychaudhuri, Soumya

Journal:

Nature Genetics

Year:

2012

Language:

english

File:

PDF, 1.18 MB

english, 2012

32

Fine mapping in the MHC region accounts for 18% additional genetic risk for celiac disease

Gutierrez-Achury, Javier, Zhernakova, Alexandra, Pulit, Sara L, Trynka, Gosia, Hunt, Karen A, Romanos, Jihane, Raychaudhuri, Soumya, van Heel, David A, Wijmenga, Cisca, de Bakker, Paul I W

Journal:

Nature Genetics

Year:

2015

Language:

english

File:

PDF, 299 KB

english, 2015

33

Improving coeliac disease risk prediction by testing non-HLA variants additional to HLA variants

Romanos, J., Rosen, A., Kumar, V., Trynka, G., Franke, L., Szperl, A., Gutierrez-Achury, J., van Diemen, C. C., Kanninga, R., Jankipersadsing, S. A., Steck, A., Eisenbarth, G., van Heel, D. A., Cukrow

Journal:

Year:

2014

Language:

english

File:

PDF, 2.06 MB

english, 2014

34

Meta-Analysis of Genome-Wide Association Studies in Celiac Disease and Rheumatoid Arthritis Identifies Fourteen Non-HLA Shared Loci

Zhernakova, Alexandra, Stahl, Eli A., Trynka, Gosia, Raychaudhuri, Soumya, Festen, Eleanora A., Franke, Lude, Westra, Harm-Jan, Fehrmann, Rudolf S. N., Kurreeman, Fina A. S., Thomson, Brian, Gupta, Na

Journal:

Year:

2011

Language:

english

File:

PDF, 478 KB

english, 2011

35

Coeliac disease-associated risk variants in TNFAIP3 and REL implicate altered NF- B signalling

Trynka, G., Zhernakova, A., Romanos, J., Franke, L., Hunt, K. A., Turner, G., Bruinenberg, M., Heap, G. A., Platteel, M., Ryan, A. W., de Kovel, C., Holmes, G. K. T., Howdle, P. D., Walters, J. R. F.,

Journal:

Year:

2009

Language:

english

File:

PDF, 573 KB

english, 2009

36

Six new coeliac disease loci replicated in an Italian population confirm association with coeliac disease

Romanos, J, Barisani, D, Trynka, G, Zhernakova, A, Bardella, M T, Wijmenga, C

Journal:

Journal of Medical Genetics

Year:

2008

Language:

english

File:

PDF, 184 KB

english, 2008

37

Using chromatin marks to interpret and localize genetic associations to complex human traits and diseases

Trynka, Gosia, Raychaudhuri, Soumya

Journal:

Current Opinion in Genetics & Development

Year:

2013

Language:

english

File:

PDF, 1.13 MB

english, 2013

38

A Meta-Analysis of Genome-Wide Association Scans Identifies IL18RAP, PTPN2, TAGAP, and PUS10 As Shared Risk Loci for Crohn's Disease and Celiac Disease

Festen, Eleonora A. M., Goyette, Philippe, Green, Todd, Boucher, Gabrielle, Beauchamp, Claudine, Trynka, Gosia, Dubois, Patrick C., Lagacé, Caroline, Stokkers, Pieter C. F., Hommes, Daan W., Barisani,

Journal:

Year:

2011

Language:

english

File:

PDF, 108 KB

english, 2011

39

Obituary.

Trynka, Gosia, Raychaudhuri, Soumya

Journal:

Year:

1867

Language:

english

File:

PDF, 375 KB

english, 1867

40

Partitioning heritability by functional annotation using genome-wide association summary statistics

Finucane, Hilary K, Bulik-Sullivan, Brendan, Gusev, Alexander, Trynka, Gosia, Reshef, Yakir, Loh, Po-Ru, Anttila, Verneri, Xu, Han, Zang, Chongzhi, Farh, Kyle, Ripke, Stephan, Day, Felix R, Purcell, S

Journal:

Nature Genetics

Year:

2015

Language:

english

File:

PDF, 921 KB

english, 2015

41

Functional implications of disease-specific variants in loci jointly associated to coeliac disease and rheumatoid arthritis

Gutierrez-Achury, Javier, Zorro, Maria Magdalena, Ricaño-Ponce, Isis, Zhernakova, Daria V., Diogo, Dorothée, Raychaudhuri, Soumya, Franke, Lude, Trynka, Gosia, Wijmenga, Cisca, Zhernakova, Alexandra

Journal:

Human Molecular Genetics

Year:

2015

Language:

english

File:

PDF, 942 KB

english, 2015

42

Association analysis of copy numbers of FC-gamma receptor genes for rheumatoid arthritis and other immune-mediated phenotypes

Franke, Lude, el Bannoudi, Hanane, Jansen, Diahann T S L, Kok, Klaas, Trynka, Gosia, Diogo, Dorothee, Swertz, Morris, Fransen, Karin, Knevel, Rachel, Gutierrez-Achury, Javier, Ärlestig, Lisbeth, Green

Journal:

European Journal of Human Genetics

Year:

2015

Language:

english

File:

PDF, 2.10 MB

english, 2015

43

ImmunoChip Study Implicates Antigen Presentation to T Cells in Narcolepsy

Faraco, Juliette, Lin, Ling, Kornum, Birgitte Rahbek, Kenny, Eimear E., Trynka, Gosia, Einen, Mali, Rico, Tom J., Lichtner, Peter, Dauvilliers, Yves, Arnulf, Isabelle, Lecendreux, Michel, Javidi, Siro

Journal:

Year:

2013

Language:

english

File:

PDF, 755 KB

english, 2013

44

A genetic perspective on coeliac disease

Gosia Trynka, Cisca Wijmenga, David A. van Heel

Journal:

Trends in Molecular Medicine

Year:

2010

Language:

english

File:

PDF, 1013 KB

english, 2010

45

34 A Meta-Analysis of Genome Wide Association Scans Identifies TAGAP and Pus10 as Shared Risk Loci for Crohn's Disease and Celiac Disease

Eleonora A. Festen, Philippe Goyette, Todd Green, Claudine Beauchamp, Caroline Lagace, Gabrielle Boucher, Gosia Trynka, Patrick C. Dubois, Pieter Stokkers, Daniel W. Hommes, Donatella Barisani, Orazio

Journal:

Gastroenterology

Year:

2010

Language:

english

File:

PDF, 49 KB

english, 2010

46

Evolutionary and Functional Analysis of Celiac Risk Loci Reveals SH2B3 as a Protective Factor against Bacterial Infection

Alexandra Zhernakova, Clara C. Elbers, Bart Ferwerda, Jihane Romanos, Gosia Trynka, Patrick C. Dubois, Carolien G.F. de Kovel, Lude Franke, Marije Oosting, Donatella Barisani, Maria Teresa Bardella, L

Journal:

The American Journal of Human Genetics

Year:

2010

Language:

english

File:

PDF, 511 KB

english, 2010

47

S1751 Copy Number Variant and Extended SNP Genome Wide Association Study in Celiac Disease

Dubois, Patrick C., Trynka, Gosia, Heap, Graham A., Hunt, Karen A., Franke, Lude, van Heel, David, Gwilliam, Rhian, Deloukas, Panagiotis, McManus, Ross, Saavalainen, Paivi, Wijmenga, Cisca

Journal:

Gastroenterology

Year:

2009

Language:

english

File:

PDF, 52 KB

english, 2009

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